STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBL5Ubiquitin like 5. (118 aa)    
Predicted Functional Partners:
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
    
 0.993
prpf8
Pre-mRNA processing factor 8.
    
 
 0.983
mfap1
Microfibril associated protein 1.
    
 0.970
prpf38a
Pre-mRNA processing factor 38A.
    
 0.967
zmat2
Zinc finger, matrin-type 2.
    
 0.916
txnl4a
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
   
  0.903
wbp11
WW domain binding protein 11.
    
 0.895
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 0.892
rbm22
RNA binding motif protein 22.
   
  0.864
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
 0.861
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.