STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSORLP00000039298THAP-type domain-containing protein. (106 aa)    
Predicted Functional Partners:
pgbd5
PiggyBac transposable element derived 5.
    
 
 0.659
mphosph6
M-phase phosphoprotein 6.
      
 0.565
mrps2
Mitochondrial ribosomal protein S2.
   
 0.489
ppp1r26
Uncharacterized protein.
   
 0.489
LOC101172575
SET domain and mariner transposase fusion gene.
   
 0.462
efcab2
Uncharacterized protein.
    
 0.445
LOC101162541
Ring finger protein 170.
      
 0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.