ENSORLP00000039421 protein (Oryzias latipes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSORLP00000039421

Integrase catalytic domain-containing protein. (347 aa)

Predicted Functional Partners:

wdr73

0.846

rbbp4

0.846

LOC101156710

0.846

HDAC3

0.664

LOC101172913

0.664

HDAC1

0.664

HDAC2

0.664

hdac8

0.664

fancm

0.634

H2M348_ORYLA

0.618

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000039421	H2M348_ORYLA	ENSORLP00000039421	ENSORLP00000012849	Integrase catalytic domain-containing protein.	Tudor-knot domain-containing protein.	0.618
ENSORLP00000039421	HDAC1	ENSORLP00000039421	ENSORLP00000021872	Integrase catalytic domain-containing protein.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.664
ENSORLP00000039421	HDAC2	ENSORLP00000039421	ENSORLP00000022529	Integrase catalytic domain-containing protein.	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.664
ENSORLP00000039421	HDAC3	ENSORLP00000039421	ENSORLP00000011294	Integrase catalytic domain-containing protein.	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.664
ENSORLP00000039421	LOC101156710	ENSORLP00000039421	ENSORLP00000021495	Integrase catalytic domain-containing protein.	Retinoblastoma binding protein 4, like.	0.846
ENSORLP00000039421	LOC101172913	ENSORLP00000039421	ENSORLP00000017757	Integrase catalytic domain-containing protein.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.664
ENSORLP00000039421	fancm	ENSORLP00000039421	ENSORLP00000018174	Integrase catalytic domain-containing protein.	Uncharacterized protein.	0.634
ENSORLP00000039421	hdac8	ENSORLP00000039421	ENSORLP00000026097	Integrase catalytic domain-containing protein.	Histone deacetylase 8.	0.664
ENSORLP00000039421	rbbp4	ENSORLP00000039421	ENSORLP00000021493	Integrase catalytic domain-containing protein.	Retinoblastoma binding protein 4.	0.846
ENSORLP00000039421	wdr73	ENSORLP00000039421	ENSORLP00000019304	Integrase catalytic domain-containing protein.	Uncharacterized protein.	0.846
H2M348_ORYLA	ENSORLP00000039421	ENSORLP00000012849	ENSORLP00000039421	Tudor-knot domain-containing protein.	Integrase catalytic domain-containing protein.	0.618
H2M348_ORYLA	HDAC1	ENSORLP00000012849	ENSORLP00000021872	Tudor-knot domain-containing protein.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.935
H2M348_ORYLA	HDAC2	ENSORLP00000012849	ENSORLP00000022529	Tudor-knot domain-containing protein.	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.935
H2M348_ORYLA	HDAC3	ENSORLP00000012849	ENSORLP00000011294	Tudor-knot domain-containing protein.	Histone deacetylase 3; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.935
H2M348_ORYLA	LOC101156710	ENSORLP00000012849	ENSORLP00000021495	Tudor-knot domain-containing protein.	Retinoblastoma binding protein 4, like.	0.990
H2M348_ORYLA	LOC101172913	ENSORLP00000012849	ENSORLP00000017757	Tudor-knot domain-containing protein.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.935
H2M348_ORYLA	hdac8	ENSORLP00000012849	ENSORLP00000026097	Tudor-knot domain-containing protein.	Histone deacetylase 8.	0.935
H2M348_ORYLA	rbbp4	ENSORLP00000012849	ENSORLP00000021493	Tudor-knot domain-containing protein.	Retinoblastoma binding protein 4.	0.990
H2M348_ORYLA	wdr73	ENSORLP00000012849	ENSORLP00000019304	Tudor-knot domain-containing protein.	Uncharacterized protein.	0.990
HDAC1	ENSORLP00000039421	ENSORLP00000021872	ENSORLP00000039421	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Integrase catalytic domain-containing protein.	0.664