STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhbdl3Rhomboid-related protein 3; May be involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors; Belongs to the peptidase S54 family. (415 aa)    
Predicted Functional Partners:
slc37a4
Solute carrier family 37 member 4a.
      
 0.817
LOC101172563
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
   
 0.755
cask
Uncharacterized protein; Belongs to the MAGUK family.
   
 0.755
LOC101160155
Membrane associated guanylate kinase, WW and PDZ domain containing 3b.
  
 0.615
LOC105354474
MAGI family member, X-linked a.
  
 0.615
LOC101159504
Uncharacterized protein.
  
 0.615
ENSORLP00000042507
Uncharacterized protein.
  
 0.615
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
  
 0.610
api5
Apoptosis inhibitor 5.
      
 0.590
Wdr90
WD_REPEATS_REGION domain-containing protein.
   
 0.585
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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