STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nagaAlpha-galactosidase. (456 aa)    
Predicted Functional Partners:
LOC101171361
Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.
   
  
 0.646
ctsz
Cathepsin Z; Belongs to the peptidase C1 family.
   
  
 0.592
man2b1
Alpha-mannosidase.
   
 
 0.517
LOC101163523
Mannose receptor, C type 1b.
   
  
 0.513
LOC101163769
Mannose receptor, C type 1b.
   
  
 0.513
galk1
Galactokinase 1.
   
 
 0.510
galk2
Galactokinase 2.
   
 
 0.509
mrc1
Mannose receptor, C type 1a.
   
  
 0.505
glb1
Beta-galactosidase.
  
 
 0.488
manba
Mannosidase, beta A, lysosomal.
      
 0.487
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.