STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nudt22Nudix (nucleoside diphosphate linked moiety X)-type motif 22. (432 aa)    
Predicted Functional Partners:
trpt1
tRNA phosphotransferase 1.
 
 
  
 0.696
nudt17
Nudix (nucleoside diphosphate linked moiety X)-type motif 17.
      
 0.664
trabd
TraB domain containing.
      
 0.654
nudt5
Nudix (nucleoside diphosphate linked moiety X)-type motif 5; Belongs to the Nudix hydrolase family.
      
 0.631
nudt14
Nudix (nucleoside diphosphate linked moiety X)-type motif 14.
      
 0.614
bckdk
Protein-serine/threonine kinase.
   
  
 0.590
nudt1
Nudix (nucleoside diphosphate linked moiety X)-type motif 1; Belongs to the Nudix hydrolase family.
   
  
 0.565
nudt12
Nudix (nucleoside diphosphate linked moiety X)-type motif 12.
    
 
 0.563
wdyhv1
WDYHV motif containing 1.
      
 0.560
qtrt1
Queuine tRNA-ribosyltransferase catalytic subunit 1; Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, formi [...]
      
 0.559
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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