STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101156036Synaptopodin 2-like a. (1116 aa)    
Predicted Functional Partners:
ctnna1
Catenin (cadherin-associated protein), alpha 1.
   
 0.512
ctnna2
Catenin (cadherin-associated protein), alpha 2.
   
 0.512
LOC101161503
Uncharacterized protein.
   
 0.512
vcl
Vinculin b.
   
 0.511
ctnnal1
Catenin (cadherin-associated protein), alpha-like 1.
   
 0.511
LOC101172101
Vinculin a.
   
 0.511
LOC101166779
Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.496
ptk2b
Protein tyrosine kinase 2 beta, b; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.496
H2MY81_ORYLA
FERM_N_2 domain-containing protein.
    
 0.496
LOC101162652
FERM domain-containing protein.
    
 0.496
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.