STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trim71Tripartite motif containing 71, E3 ubiquitin protein ligase. (826 aa)    
Predicted Functional Partners:
LOC101173047
Epithelial splicing regulatory protein 2.
     
 0.589
rnf181
Ring finger protein 181.
     
 0.565
sall4
Spalt-like transcription factor 4.
   
  
 0.538
eomes
Eomesodermin homolog b.
     
 0.506
LOC101156528
Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.
      
 0.501
LOC101169811
CCHC-type domain-containing protein.
   
 
 0.467
bbox1
Butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1.
      
 0.457
ubc
Ubiquitin B.
   
  0.449
cmtm8
CKLF-like MARVEL transmembrane domain containing 8a.
      
 0.442
LOC101156981
Glycerol-3-phosphate acyltransferase 2, mitochondrial.
     
 0.438
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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