STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101156568Bassoon (presynaptic cytomatrix protein) b. (3697 aa)    
Predicted Functional Partners:
LOC101155978
Piccolo presynaptic cytomatrix protein a.
  
0.620
LOC101160647
Extended synaptotagmin-like protein 1b.
     
 0.593
sharpin
SHANK-associated RH domain interacting protein.
      
 0.569
tspan11
Tetraspanin.
      
 0.568
LOC101173223
Extended synaptotagmin-like protein 1a.
     
 0.543
LOC101161995
Platelet endothelial aggregation receptor 1.
   
  
 0.521
ctbp1
C-terminal binding protein 1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.503
LOC101158706
C-terminal binding protein 1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.503
LOC101168811
Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.503
ctbp2
Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.503
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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