STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem53Transmembrane protein 53. (292 aa)    
Predicted Functional Partners:
LOC101168588
Leucine rich repeat containing 4.1.
      
 0.740
rbm28
RNA binding motif protein 28.
      
 0.706
sh3yl1
SH3 and SYLF domain containing 1.
      
 0.630
lrrc4
Leucine rich repeat containing 4.2.
      
 0.622
prrt4
Si:dkey-31f5.11.
   
  
 0.574
acbd6
Acyl-CoA binding domain containing 6.
      
 0.563
Tmem223
Transmembrane protein 223.
      
 0.560
dmap1
DNA methyltransferase 1 associated protein 1.
      
 0.558
tmem147
Transmembrane protein 147.
      
 0.558
kifap3
Kinesin-associated protein 3b.
      
 0.558
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.