STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSORLP00000040115Uncharacterized protein. (259 aa)    
Predicted Functional Partners:
LOC101155530
Procollagen, type V, alpha 1.
 
      0.899
H2MYB6_ORYLA
Fibrillar collagen NC1 domain-containing protein.
 
      0.899
LOC101172057
Collagen, type V, alpha 2b.
 
 
 
  0.709
col1a2
Collagen, type I, alpha 2.
 
 
 
  0.706
LOC100529192
Collagen, type II, alpha 1a.
 
 
 
  0.670
col2a1a
Type II collagen A isoform 1.
 
 
 
  0.664
col1
Uncharacterized protein.
 
 
 
  0.651
LOC100529176
Collagen, type X, alpha 1a.
 
      0.458
Tep1
Uncharacterized protein.
    
 0.412
ENSORLP00000040907
TROVE domain-containing protein.
    
 0.410
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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