STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cln8CLN8 transmembrane ER and ERGIC protein. (350 aa)    
Predicted Functional Partners:
cln6
CLN6 transmembrane ER protein a.
      
 0.670
Cln5
CLN5 intracellular trafficking protein.
      
 0.665
ppt1
Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).
      
 0.652
mfsd8
Major facilitator superfamily domain containing 8.
      
 0.641
cln3
Battenin.
      
 0.635
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
    
 
 0.567
tpp1
Tripeptidyl peptidase I.
    
 
 0.525
urb1
URB1 ribosome biogenesis homolog.
      
 0.451
spag17
Uncharacterized protein.
    
 
 0.450
gm2a
GM2 ganglioside activator.
      
 0.450
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.