STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ift46Intraflagellar transport 46 homolog (Chlamydomonas). (316 aa)    
Predicted Functional Partners:
ttc26
Tetratricopeptide repeat domain 26.
  
 0.985
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.984
ift57
Intraflagellar transport 57 homolog (Chlamydomonas).
  
 
 0.980
ift81
Intraflagellar transport 81 homolog.
  
 
 0.980
LOC101171914
Fleer.
    
 0.978
cluap1
Clusterin associated protein 1.
  
 
 0.973
ift172
Intraflagellar transport 172.
   
 0.972
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
    
 0.972
ift74
Intraflagellar transport 74.
    
 0.966
traf3ip1
TNF receptor-associated factor 3 interacting protein 1.
    
 0.966
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.