STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
roraRAR-related orphan receptor A, paralog a. (531 aa)    
Predicted Functional Partners:
nrip1
Nuclear receptor interacting protein 1b.
    
 0.830
ncor1
Nuclear receptor corepressor 1.
    
 0.775
ncor2
Nuclear receptor corepressor 2.
    
 0.775
LOC101172430
Neuronal PAS domain protein 2.
    
 0.648
ARNTL2
Aryl hydrocarbon receptor nuclear translocator like 2.
    
 0.630
LOC101174183
Aryl hydrocarbon receptor nuclear translocator-like 2.
    
 0.630
LOC101160197
E1A binding protein p300 a.
    
 0.575
LOC101168870
E1A binding protein p300 b.
    
 0.575
llgl2
LLGL scribble cell polarity complex component 2.
      
 0.568
otud7a
OTU deubiquitinase 7A.
      
 0.565
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.