STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167562Beta-secretase 2; Belongs to the peptidase A1 family. (521 aa)    
Predicted Functional Partners:
LOC101172288
Amyloid beta (A4) precursor protein b.
    
 0.691
APP
Amyloid beta precursor protein.
    
 0.691
LOC101156469
Uncharacterized protein.
    
 0.617
LOC101171835
Uncharacterized protein.
    
 0.617
LOC101158748
Golgi associated, gamma adaptin ear containing, ARF binding protein 1.
    
 0.617
aplp2
Amyloid beta (A4) precursor-like protein 2.
    
 0.574
sez6l
Seizure related 6 homolog (mouse)-like.
   
 0.568
aplp1
Amyloid beta (A4) precursor-like protein 1.
    
 0.549
atp6ap2
ATPase H+ transporting accessory protein 2.
   
 0.483
LOC100049240
Furin (paired basic amino acid cleaving enzyme) a; Belongs to the peptidase S8 family.
   
 0.450
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.