STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
neu3Sialidase 3a. (410 aa)    
Predicted Functional Partners:
arsa
Arylsulfatase A.
  
 0.930
gla
Alpha-galactosidase.
     
  0.900
ugt8
UDP glycosyltransferase 8; Belongs to the UDP-glycosyltransferase family.
   
 
  0.900
gal3st1
Galactose-3-O-sulfotransferase 1a.
     
  0.900
LOC101159931
Galactose-3-O-sulfotransferase 1b.
     
  0.900
galc
Galactosylceramidase b.
     
  0.900
ENSORLP00000040075
Uncharacterized protein.
     
  0.900
ctsa
Carboxypeptidase; Belongs to the peptidase S10 family.
    
 0.613
ift81
Intraflagellar transport 81 homolog.
    
 0.496
neu1
Sialidase 1.
  
  
0.490
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.