STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101165675Uncharacterized protein. (1020 aa)    
Predicted Functional Partners:
CDC42
Cell division cycle 42.
   
 0.760
LOC101164400
Uncharacterized protein.
   
 0.760
nphp4
Uncharacterized protein.
    
 0.743
LOC101164658
Uncharacterized protein.
   
 0.654
LOC101174454
Uncharacterized protein.
   
 0.654
LOC105354522
Rac family small GTPase 3b.
   
 0.567
LOC101159016
Uncharacterized protein.
   
 0.567
LOC101175028
Uncharacterized protein.
   
 0.567
LOC101163549
Uncharacterized protein.
   
 0.567
LOC101166499
Profilin; Belongs to the profilin family.
    
 0.537
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.