STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fastkd2FAST kinase domains 2. (650 aa)    
Predicted Functional Partners:
rars2
Arginyl-tRNA synthetase 2, mitochondrial (putative); Belongs to the class-I aminoacyl-tRNA synthetase family.
   
  
 0.824
MTERF1
Mitochondrial transcription termination factor 1.
   
 
 0.812
ngrn
Neugrin, neurite outgrowth associated.
    
 
 0.798
mterf3
Mitochondrial transcription termination factor 3.
   
 
 0.765
ddx28
DEAD (Asp-Glu-Ala-Asp) box polypeptide 28.
   
 
 0.756
tfb2m
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
   
  
 0.743
trub2
TruB pseudouridine (psi) synthase family member 2.
   
 
 0.736
LOC101164300
RNA pseudouridine synthase D4.
   
 
 0.675
lamp2
Lysosomal-associated membrane protein 2.
      
 0.657
fastkd3
FAST kinase domains 3.
   
 
 0.615
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.