STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLOCKClock circadian regulator a. (610 aa)    
Predicted Functional Partners:
ARNTL2
Aryl hydrocarbon receptor nuclear translocator like 2.
   
0.813
LOC101174183
Aryl hydrocarbon receptor nuclear translocator-like 2.
   
0.813
LOC101159313
Aryl hydrocarbon receptor nuclear translocator-like 1a.
   
0.813
LOC101159817
Period circadian clock 3.
    
 0.811
PER2
Period circadian regulator 2.
    
 0.804
LOC101161338
Period circadian clock 2.
    
 0.804
LOC101173389
Cryptochrome circadian regulator 2.
   
 0.722
npas4
Neuronal PAS domain protein 4a.
    
 0.715
H2MC09_ORYLA
Uncharacterized protein.
    
 0.715
per1
Period homolog 1.
    
 0.703
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.