STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fblim1Filamin binding LIM protein 1. (379 aa)    
Predicted Functional Partners:
H2MSC4_ORYLA
Uncharacterized protein.
   
 0.783
H2MVN6_ORYLA
Calponin-homology (CH) domain-containing protein.
   
 0.783
LOC101166705
Uncharacterized protein.
   
 0.783
flnc
Uncharacterized protein.
   
 0.783
LOC101173301
Uncharacterized protein.
   
 0.783
ENSORLP00000037851
Uncharacterized protein.
   
 0.783
fermt2
Fermitin family member 2.
    
 0.779
fermt1
Fermitin family member 1.
    
 0.779
haus1
HAUS augmin-like complex, subunit 1.
   
 0.778
haus3
HAUS augmin-like complex, subunit 3.
   
 0.759
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.