STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdlim7PDZ and LIM domain 7. (491 aa)    
Predicted Functional Partners:
LOC101172084
MICAL like 1b, duplicate 2.
   
 0.649
ehbp1
EH domain binding protein 1.
   
 0.649
LOC101157163
Uncharacterized protein.
   
 0.649
LOC101157556
Uncharacterized protein.
   
 0.649
higd2a
HIG1 hypoxia inducible domain family, member 2A.
      
 0.591
LOC101165171
Uncharacterized protein.
   
 
0.588
pdlim1
PDZ and LIM domain 1 (elfin).
   
 
0.577
pdlim2
PDZ and LIM domain 2 (mystique).
     
0.574
vcl
Vinculin b.
   
 0.572
LOC101172101
Vinculin a.
   
 0.572
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.