STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162865Neurocalcin delta a. (252 aa)    
Predicted Functional Partners:
LOC101172563
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
    
 0.686
cask
Uncharacterized protein; Belongs to the MAGUK family.
    
 0.686
pi4kb
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 
 0.637
LOC101161567
Phosphatidylinositol 4-kinase beta; Belongs to the PI3/PI4-kinase family.
    
 
 0.637
calm3
Calmodulin-A; Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.
    
 0.494
LOC100049422
Uncharacterized protein; Belongs to the calmodulin family.
    
0.494
LOC100049419
Calmodulin.
    
 0.494
calm2
Calmodulin 2.
    
 0.494
xpc
Xeroderma pigmentosum, complementation group C.
    
 0.494
Kcnf1
Potassium voltage-gated channel, subfamily F, member 1a; Belongs to the potassium channel family.
   
 0.448
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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