STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162694Human immunodeficiency virus type I enhancer binding protein 3a. (1692 aa)    
Predicted Functional Partners:
LOC101161658
Allograft inflammatory factor 1-like.
    
 0.543
AIF1
Allograft inflammatory factor 1.
    
 0.543
LOC101172442
C2H2-type domain-containing protein.
  
     0.524
LOC101167935
Uncharacterized protein.
  
 
   0.478
LOC101159448
Shisa family member 7.
  
 
 0.473
ppp1r26
Uncharacterized protein.
  
  0.471
LOC101157992
Uncharacterized protein.
    
 0.461
LOC101173740
Uncharacterized protein.
  
 
  0.439
krt222
Keratin 222; Belongs to the intermediate filament family.
  
 
  0.428
H2M348_ORYLA
Tudor-knot domain-containing protein.
    
 0.406
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.