STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158865Dimethylarginine dimethylaminohydrolase 2. (290 aa)    
Predicted Functional Partners:
LOC101158366
Chloride intracellular channel protein; Belongs to the chloride channel CLIC family.
    
 
 0.586
RING1
Ring finger protein 1.
      
 0.562
oat
Ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.535
mlf2
Myeloid leukemia factor 2.
      
 0.531
zbtb12
Zinc finger and BTB domain containing 12, tandem duplicate 1.
     
 0.531
agxt2
Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.517
slc7a4
Solute carrier family 7 member 4.
  
  
 0.513
nitr14
Uncharacterized protein.
      
 0.503
bf/c2
Bf/C2 protein; Belongs to the peptidase S1 family.
      
 0.502
skiv2l
SKI2 homolog, superkiller viralicidic activity 2-like.
   
  
 0.501
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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