STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101170466Ubiquitin-like domain-containing protein. (136 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
    
 0.981
fancm
Uncharacterized protein.
   
 0.971
traf7
TNF receptor-associated factor 7.
   
 0.925
trip12
Thyroid hormone receptor interactor 12.
   
 0.924
LOC101155936
NBR1 autophagy cargo receptor b.
   
 0.916
nbr1
NBR1 autophagy cargo receptor a.
   
 0.916
rps25
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.873
rps24
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
 0.872
rps3a
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.863
rps18
Ribosomal protein S18.
   
 0.862
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.