tmem64 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tmem64

Transmembrane protein 64. (352 aa)

Predicted Functional Partners:

gldc

0.559

fbxo8

0.558

pdhb

0.523

bckdhb

0.500

LOC101155190

0.489

LOC101156637

0.489

LOC101167825

0.484

nadk

0.484

phyhip

0.442

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101155190	bckdhb	ENSORLP00000011711	ENSORLP00000033830	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Branched chain keto acid dehydrogenase E1 subunit beta.	0.759
LOC101155190	gldc	ENSORLP00000011711	ENSORLP00000029139	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.999
LOC101155190	pdhb	ENSORLP00000011711	ENSORLP00000034230	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.751
LOC101155190	tmem64	ENSORLP00000011711	ENSORLP00000040965	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Transmembrane protein 64.	0.489
LOC101156637	bckdhb	ENSORLP00000027593	ENSORLP00000033830	Glycine cleavage system protein H (aminomethyl carrier), b.	Branched chain keto acid dehydrogenase E1 subunit beta.	0.759
LOC101156637	gldc	ENSORLP00000027593	ENSORLP00000029139	Glycine cleavage system protein H (aminomethyl carrier), b.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.995
LOC101156637	pdhb	ENSORLP00000027593	ENSORLP00000034230	Glycine cleavage system protein H (aminomethyl carrier), b.	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.751
LOC101156637	tmem64	ENSORLP00000027593	ENSORLP00000040965	Glycine cleavage system protein H (aminomethyl carrier), b.	Transmembrane protein 64.	0.489
LOC101167825	nadk	ENSORLP00000022483	ENSORLP00000030640	NAD kinase b.	NAD kinase a.	0.901
LOC101167825	tmem64	ENSORLP00000022483	ENSORLP00000040965	NAD kinase b.	Transmembrane protein 64.	0.484
bckdhb	LOC101155190	ENSORLP00000033830	ENSORLP00000011711	Branched chain keto acid dehydrogenase E1 subunit beta.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.759
bckdhb	LOC101156637	ENSORLP00000033830	ENSORLP00000027593	Branched chain keto acid dehydrogenase E1 subunit beta.	Glycine cleavage system protein H (aminomethyl carrier), b.	0.759
bckdhb	pdhb	ENSORLP00000033830	ENSORLP00000034230	Branched chain keto acid dehydrogenase E1 subunit beta.	Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.	0.684
bckdhb	tmem64	ENSORLP00000033830	ENSORLP00000040965	Branched chain keto acid dehydrogenase E1 subunit beta.	Transmembrane protein 64.	0.500
fbxo8	tmem64	ENSORLP00000035105	ENSORLP00000040965	F-box protein 8.	Transmembrane protein 64.	0.558
gldc	LOC101155190	ENSORLP00000029139	ENSORLP00000011711	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.999
gldc	LOC101156637	ENSORLP00000029139	ENSORLP00000027593	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Glycine cleavage system protein H (aminomethyl carrier), b.	0.995
gldc	tmem64	ENSORLP00000029139	ENSORLP00000040965	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Transmembrane protein 64.	0.559
nadk	LOC101167825	ENSORLP00000030640	ENSORLP00000022483	NAD kinase a.	NAD kinase b.	0.901
nadk	tmem64	ENSORLP00000030640	ENSORLP00000040965	NAD kinase a.	Transmembrane protein 64.	0.484