STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSORLP00000041124Uncharacterized protein. (1004 aa)    
Predicted Functional Partners:
ENSORLP00000030324
Uncharacterized protein.
  
 
  0.515
ENSORLP00000028880
Uncharacterized protein.
  
     0.501
LOC101165002
C1q domain-containing protein.
  
 
  0.501
H2L673_ORYLA
Uncharacterized protein.
  
 
  0.487
LOC100529176
Collagen, type X, alpha 1a.
  
 
  0.486
H2MDW6_ORYLA
Uncharacterized protein.
  
 
  0.485
ENSORLP00000018240
Si:dkey-117n7.4.
 
 
  0.480
col8a1
Collagen, type VIII, alpha 1b.
  
 
  0.479
ENSORLP00000030516
annotation not available
  
 
  0.479
H2MUX9_ORYLA
Uncharacterized protein.
  
 
  0.475
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.