STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101154885Transient receptor potential cation channel subfamily C member 4; Belongs to the transient receptor (TC 1.A.4) family. (926 aa)    
Predicted Functional Partners:
trpa1
Transient receptor potential cation channel, subfamily A, member 1b; Belongs to the transient receptor (TC 1.A.4) family.
   
 
 0.699
LOC101158366
Chloride intracellular channel protein; Belongs to the chloride channel CLIC family.
      
 0.659
trpc1
Transient receptor potential cation channel, subfamily C, member 1; Belongs to the transient receptor (TC 1.A.4) family.
  
 
0.647
fkbpl
TPR_REGION domain-containing protein.
   
  
 0.637
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
      
 0.612
LOC101158057
Canopy FGF signaling regulator 3.
 
    
 0.604
LHFPL6
LHFPL tetraspan subfamily member 6.
      
 0.588
LOC101169131
Tripartite motif containing 3b.
    
 
 0.576
LOC101175583
Tripartite motif containing 3a.
    
 
 0.576
LOC101175097
Dachsous cadherin-related 1a.
      
 0.574
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.