STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164514SKICH domain-containing protein. (600 aa)    
Predicted Functional Partners:
map1lc3c
Microtubule-associated protein 1 light chain 3 gamma.
   
 0.943
rb1cc1
RB1-inducible coiled-coil 1.
    
 
 0.941
GABARAPL2
GABA type A receptor associated protein like 2.
   
 0.939
gabarap
GABA(A) receptor-associated protein b.
   
 0.939
LOC101170049
Zgc:92606.
   
  0.917
azi2
5-azacytidine induced 2.
    
 
 0.874
LOC101171466
Galectin.
    
 
 0.824
LOC101158661
Galectin.
    
 
 0.824
optn
Optineurin.
    
 0.692
ikbke
Inhibitor of nuclear factor kappa B kinase subunit epsilon.
    
 0.681
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.