trhr2 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

trhr2

Thyrotropin-releasing hormone receptor 2; Belongs to the G-protein coupled receptor 1 family. (451 aa)

Predicted Functional Partners:

trh

0.981

LOC101168718

0.794

LOC101168962

0.794

LOC101161353

0.794

LOC101157684

0.775

LOC101167719

0.704

prok1

0.679

prok2

0.643

LOC101157262

0.591

edn1

0.557

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101157262	prok1	ENSORLP00000044149	ENSORLP00000043504	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Prokineticin 1.	0.626
LOC101157262	prok2	ENSORLP00000044149	ENSORLP00000035713	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Prokineticin 2.	0.555
LOC101157262	trhr2	ENSORLP00000044149	ENSORLP00000041293	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Thyrotropin-releasing hormone receptor 2; Belongs to the G-protein coupled receptor 1 family.	0.591
LOC101157684	LOC101161353	ENSORLP00000033208	ENSORLP00000017728	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	0.747
LOC101157684	LOC101167719	ENSORLP00000033208	ENSORLP00000005961	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	Uncharacterized protein.	0.553
LOC101157684	LOC101168718	ENSORLP00000033208	ENSORLP00000007128	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	Uncharacterized protein.	0.747
LOC101157684	LOC101168962	ENSORLP00000033208	ENSORLP00000007142	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	Guanine nucleotide binding protein (G protein), alpha 14a.	0.747
LOC101157684	edn1	ENSORLP00000033208	ENSORLP00000011633	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	Endothelin 1.	0.473
LOC101157684	trhr2	ENSORLP00000033208	ENSORLP00000041293	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	Thyrotropin-releasing hormone receptor 2; Belongs to the G-protein coupled receptor 1 family.	0.775
LOC101161353	LOC101157684	ENSORLP00000017728	ENSORLP00000033208	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	0.747
LOC101161353	LOC101167719	ENSORLP00000017728	ENSORLP00000005961	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Uncharacterized protein.	0.901
LOC101161353	LOC101168718	ENSORLP00000017728	ENSORLP00000007128	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Uncharacterized protein.	0.910
LOC101161353	LOC101168962	ENSORLP00000017728	ENSORLP00000007142	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Guanine nucleotide binding protein (G protein), alpha 14a.	0.545
LOC101161353	edn1	ENSORLP00000017728	ENSORLP00000011633	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Endothelin 1.	0.465
LOC101161353	trhr2	ENSORLP00000017728	ENSORLP00000041293	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Thyrotropin-releasing hormone receptor 2; Belongs to the G-protein coupled receptor 1 family.	0.794
LOC101167719	LOC101157684	ENSORLP00000005961	ENSORLP00000033208	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	0.553
LOC101167719	LOC101161353	ENSORLP00000005961	ENSORLP00000017728	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	0.901
LOC101167719	LOC101168718	ENSORLP00000005961	ENSORLP00000007128	Uncharacterized protein.	Uncharacterized protein.	0.901
LOC101167719	LOC101168962	ENSORLP00000005961	ENSORLP00000007142	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha 14a.	0.547
LOC101167719	trhr2	ENSORLP00000005961	ENSORLP00000041293	Uncharacterized protein.	Thyrotropin-releasing hormone receptor 2; Belongs to the G-protein coupled receptor 1 family.	0.704

page 1 of 3

Server load: low (16%) [HD]

Permalink

Network

Cooccurrence

Experiments

Neighborhood

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About