STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSORLP00000041402ANK_REP_REGION domain-containing protein. (494 aa)    
Predicted Functional Partners:
LOC101171716
Serine/threonine-protein phosphatase.
    
 0.586
PPP6C
Serine/threonine-protein phosphatase.
    
 0.586
ppp6r2
Protein phosphatase 6, regulatory subunit 2a.
    
 0.553
ppp6r3
Protein phosphatase 6, regulatory subunit 3.
    
 0.553
LOC101175152
Protein phosphatase 6, regulatory subunit 2b.
    
 0.553
vps29
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
   
 
 0.498
ift81
Intraflagellar transport 81 homolog.
    
 0.496
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.465
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.458
ift88
Intraflagellar transport 88 homolog.
   
 0.458
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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