STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cxxc1CXXC finger protein 1b. (582 aa)    
Predicted Functional Partners:
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
   
 0.966
rbbp5
Retinoblastoma binding protein 5.
    
 0.963
H2N0U4_ORYLA
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 0.935
wdr82
WD repeat domain 82.
   
 0.916
LOC101173843
WD_REPEATS_REGION domain-containing protein.
   
 0.916
setd1b
SET domain containing 1B, histone lysine methyltransferase a.
   
 0.896
LOC101168786
SET domain containing 1A, histone lysine methyltransferase.
   
 0.896
ENSORLP00000032560
Uncharacterized protein.
   
 0.896
wdr5
WD repeat domain 5.
   
 0.867
actl6a
Actin-like 6A; Belongs to the actin family.
   
 
 0.662
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.