STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rapgef6Rap guanine nucleotide exchange factor (GEF) 6. (1715 aa)    
Predicted Functional Partners:
LOC105355609
F11 receptor, tandem duplicate 1.
     
 0.943
LOC101167529
RAP1A, member of RAS oncogene family b.
    
 0.942
LOC101171247
RAP1A, member of RAS oncogene family a.
    
 0.942
rapgef2
Rap guanine nucleotide exchange factor (GEF) 2.
  
 
0.645
mras
Muscle RAS oncogene homolog.
    
 0.617
LOC101172197
TERF1 (TRF1)-interacting nuclear factor 2.
    
  0.605
LOC101165394
GRB2 related adaptor protein 2a.
   
 0.594
LOC101166194
GRB2 related adaptor protein b.
   
 0.594
LOC101160815
GRB2 related adaptor protein a.
   
 0.594
grb2
Growth factor receptor-bound protein 2b.
   
 0.594
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.