STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
baz2aBromodomain adjacent to zinc finger domain, 2A. (2659 aa)    
Predicted Functional Partners:
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
    
 0.842
hells
Helicase, lymphoid specific.
    
 0.777
chd1l
Chromodomain helicase DNA binding protein 1-like.
    
 0.777
pole3
CBFD_NFYB_HMF domain-containing protein.
    
 
 0.718
LOC101163354
Stathmin; Belongs to the stathmin family.
      
 0.671
LOC101158221
Glutamate receptor, ionotropic, AMPA 3a.
      
 0.671
sf3b1
Splicing factor 3b, subunit 1.
   
 0.639
ercc6
Excision repair cross-complementation group 6.
    
 0.631
mybbp1a
MYB binding protein (P160) 1a.
    
 0.599
dek
DEK proto-oncogene.
    
 0.591
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.