STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pex3Peroxisomal biogenesis factor 3. (362 aa)    
Predicted Functional Partners:
pex19
Peroxisomal biogenesis factor 19.
    
 0.999
pex13
Peroxisomal biogenesis factor 13.
   
 0.991
pex12
Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
   
 0.984
pex14
Peroxisomal biogenesis factor 14.
   
 0.980
pex16
Peroxisomal membrane protein PEX16.
    
 0.904
abcd3
ATP-binding cassette, sub-family D (ALD), member 3a.
   
 0.887
LOC101171574
Peroxisomal biogenesis factor 11 alpha.
   
 0.853
pex11b
Peroxisomal biogenesis factor 11 beta.
   
 0.853
Pex2
Peroxisomal biogenesis factor 2.
   
 
 0.842
fam185a
Family with sequence similarity 185 member A.
   
 0.839
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.