STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C1orf146Chromosome 1 open reading frame 146. (172 aa)    
Predicted Functional Partners:
barhl1
BarH-like homeobox 1a.
      
 0.788
c22h15orf41
Zgc:154061.
  
 0.643
ndufab1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.617
palb2
PALB2_WD40 domain-containing protein.
  
 0.617
barhl2
BarH-like homeobox 2.
      
 0.592
aasdh
Aminoadipate-semialdehyde dehydrogenase.
    
 0.587
Hfm1
Helicase for meiosis 1.
      
 0.558
msh4
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
   
  
 0.535
SP3
Sp3a transcription factor.
   
 
 0.524
rce1
Ras converting CAAX endopeptidase 1a.
      
 0.501
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.