STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hnrnplHeterogeneous nuclear ribonucleoprotein L. (537 aa)    
Predicted Functional Partners:
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.729
LOC101167466
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.729
LOC101155211
Serine and arginine rich splicing factor 7a.
 
 
 0.708
H2M705_ORYLA
TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.676
HNRNPUL1
Heterogeneous nuclear ribonucleoprotein U like 1.
   
 0.669
hnrnpu
Heterogeneous nuclear ribonucleoprotein Ub.
   
 0.669
LOC101169703
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
   0.668
ube2i
Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.
    
   0.668
ptbp1b
Uncharacterized protein.
   
0.650
PTBP2
Polypyrimidine tract binding protein 2a.
   
0.650
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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