STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ascc2Activating signal cointegrator 1 complex subunit 2. (754 aa)    
Predicted Functional Partners:
ascc3
Activating signal cointegrator 1 complex subunit 3.
    
 0.977
ascc1
Activating signal cointegrator 1 complex subunit 1.
    
 0.947
trip4
Thyroid hormone receptor interactor 4.
    
 
 0.947
Hfm1
Helicase for meiosis 1.
    
 0.942
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
    
 0.856
akap7
Uncharacterized protein.
    
 0.822
znf598
Zinc finger protein 598.
    
 
 0.594
crnkl1
Crooked neck pre-mRNA splicing factor 1.
   
  
 0.572
NEMF
Nuclear export mediator factor.
      
 0.560
ppm1f
Protein phosphatase, Mg2+/Mn2+ dependent, 1F.
      
 0.559
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.