STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162943LIM domain kinase 1b. (773 aa)    
Predicted Functional Partners:
cfl1
Cofilin 1; Belongs to the actin-binding proteins ADF family.
   
 0.973
LOC101159957
Cofilin 2 (muscle); Belongs to the actin-binding proteins ADF family.
   
 0.973
LOC101164501
ADF-H domain-containing protein; Belongs to the actin-binding proteins ADF family.
   
 0.969
PAK3
Non-specific serine/threonine protein kinase.
    
0.951
pak1
Non-specific serine/threonine protein kinase.
    
0.951
LOC101169249
Non-specific serine/threonine protein kinase.
    
0.951
pak2
Non-specific serine/threonine protein kinase.
    
0.951
pak4
Non-specific serine/threonine protein kinase.
    
0.943
LOC101157339
P21 protein (Cdc42/Rac)-activated kinase 6b.
    
0.943
pak6
Non-specific serine/threonine protein kinase.
    
0.943
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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