STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163406H15 domain-containing protein. (257 aa)    
Predicted Functional Partners:
kpnb1
Karyopherin (importin) beta 1.
    
   0.723
H2LR68_ORYLA
Histone H2A; Belongs to the histone H2A family.
   
 0.596
dffb
DNA fragmentation factor, beta polypeptide (caspase-activated DNase).
    
 0.591
rpa2
Replication protein A2.
    
 0.570
stn1
CST complex subunit STN1; Component of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. Initially the CST complex has been proposed to protect telomeres from DNA degradation. However, the CST complex has been shown to be involved in several aspects of telomere replication.
    
 0.570
LOC101154936
SAS-6 centriolar assembly protein.
    
 0.570
LOC111947820
Uncharacterized protein.
      
 0.501
LOC101156698
Uncharacterized protein.
      
 0.499
ITPRID2
ITPR interacting domain containing 2.
      
 0.499
guca1b
Uncharacterized protein.
      
 0.499
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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