STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167207Sarcolemma associated protein b. (406 aa)    
Predicted Functional Partners:
fgfr1op2
FGFR1 oncogene partner 2.
    
 
 0.883
pdcd10
Programmed cell death 10b.
   
 
 0.874
LOC110014886
MOB family member 4, phocein.
    
 
 0.817
LOC101172970
Poly(rC) binding protein 4.
    
 
 0.816
LOC101168460
Membrane associated guanylate kinase, WW and PDZ domain containing 1a.
      
 0.814
Unc79
Uncharacterized protein.
    
 0.786
LOC101167061
Protein phosphatase 2, regulatory subunit A, beta b.
    
 
 0.782
sike1
Suppressor of IKBKE 1.
    
 
 0.743
strip1
Striatin interacting protein 1.
    
 
 0.709
LOC101159479
Striatin interacting protein 2.
    
 
 0.709
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.