STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159411ATP-binding cassette, sub-family C (CFTR/MRP), member 4. (1346 aa)    
Predicted Functional Partners:
ABCC4
ATP binding cassette subfamily C member 4.
  
  
 
0.901
LOC101170734
Uncharacterized protein.
  
  
 
0.901
abce1
ATP-binding cassette, sub-family E (OABP), member 1.
      
 0.578
katnal2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
  
 0.567
LOC101169766
Serpin peptidase inhibitor, clade G (C1 inhibitor), member 1; Belongs to the serpin family.
   
  
 0.565
LOC101167488
ATP-binding cassette, sub-family G (WHITE), member 2a.
  
 0.555
rab20
RAB20, member RAS oncogene family.
    
 
 0.532
abcf3
ATP-binding cassette, sub-family F (GCN20), member 3.
  
 
 0.512
ip6k2
Kinase; Belongs to the inositol phosphokinase (IPK) family.
      
 0.502
gopc
Golgi-associated PDZ and coiled-coil motif containing.
   
 0.493
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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