STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmieTransmembrane inner ear. (215 aa)    
Predicted Functional Partners:
LOC101158452
Transmembrane channel-like protein.
     
 0.606
TMC1
Transmembrane channel-like protein.
     
 0.601
LOC101167136
Transmembrane channel-like protein.
     
 0.580
lhfpl5
LHFPL tetraspan subfamily member 5b.
     
 0.543
LOC101161799
LHFPL tetraspan subfamily member 5a.
     
 0.543
LOC101166471
Calcium and integrin binding family member 2.
     
 0.507
LOC101169107
Uncharacterized protein.
     
 0.507
cib3
Calcium and integrin binding family member 3.
     
 0.507
CIB2
Calcium and integrin binding family member 2.
     
 0.507
H2L6P1_ORYLA
LHFPL tetraspan subfamily member 4a.
     
 0.488
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.