STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101169504Synaptotagmin binding, cytoplasmic RNA interacting protein. (636 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30.
   
   0.707
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.665
LOC101167466
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.665
hnrnph1
Heterogeneous nuclear ribonucleoprotein H1.
   
 0.613
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 0.611
HNRNPH3
Heterogeneous nuclear ribonucleoprotein H3.
   
 0.596
H2N0H8_ORYLA
RRM domain-containing protein.
   
 0.592
SRSF3
Serine and arginine rich splicing factor 3b.
   
 0.592
HNRNPUL1
Heterogeneous nuclear ribonucleoprotein U like 1.
   
 0.580
LOC101162697
Serine and arginine rich splicing factor 1a.
   
 0.580
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.