STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161306zf-4CXXC_R1 domain-containing protein. (374 aa)    
Predicted Functional Partners:
mib2
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.624
LOC101175223
Uncharacterized protein.
   
 0.509
tradd
Tnfrsf1a-associated via death domain.
    
 0.491
birc6
Baculoviral IAP repeat containing 6.
   
 0.478
Birc6
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.478
tab3
TGF-beta activated kinase 1 (MAP3K7) binding protein 3.
    
 0.464
tab2
TGF-beta activated kinase 1 (MAP3K7) binding protein 2.
    
 0.464
H2M6E4_ORYLA
Uncharacterized protein.
   
 0.453
LOC101165932
Intersectin 2a.
   
 0.453
ENSORLP00000032656
Uncharacterized protein.
    
 0.453
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.