STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168000Cytochrome C oxidase assembly factor 5. (75 aa)    
Predicted Functional Partners:
mrpl51
Mitochondrial ribosomal protein L51.
   
  
 0.924
MRPL49
Mitochondrial ribosomal protein L49.
   
  
 0.909
mrpl20
Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.
   
  
 0.905
mrpl48
Mitochondrial ribosomal protein L48.
   
  
 0.837
LOC101170379
Cytochrome c oxidase copper chaperone COX17.
   
  
 0.766
Timm9
zf-Tim10_DDP domain-containing protein.
   
  
 0.710
PET117
PET117 cytochrome c oxidase chaperone.
   
  
 0.691
gfer
Sulfhydryl oxidase.
   
  
 0.668
UBL5
Ubiquitin like 5.
   
  
 0.661
txndc9
Thioredoxin domain containing 9.
      
 0.646
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.