STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSORLP00000042136Uncharacterized protein. (205 aa)    
Predicted Functional Partners:
Plod3
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3.
 
      0.761
farsb
Phenylalanyl-tRNA synthetase subunit beta; Belongs to the EF-1-beta/EF-1-delta family.
   
 
 0.573
srpk1
SRSF protein kinase 1a.
      
 0.558
LOC111949083
Forkhead box C1.
      
 0.558
ENSORLP00000029394
Uncharacterized protein.
   
 0.534
LOC101161789
Collagen beta(1-O)galactosyltransferase 2.
   
 0.503
LOC101160659
Collagen beta(1-O)galactosyltransferase 1.
   
 0.503
colgalt1
Uncharacterized protein.
   
 0.503
cercam
Cerebral endothelial cell adhesion molecule.
   
 0.503
LOC101162553
Collagen, type VI, alpha 2.
   
 0.446
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.