STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163436Si:dkeyp-69b9.6. (1555 aa)    
Predicted Functional Partners:
LOC101175499
Activating transcription factor 5a.
  
 
   0.467
LOC101172006
Si:ch211-137a8.4.
  
  0.463
LOC101167096
DUF4596 domain-containing protein.
  
 
  0.455
LOC101162199
Si:ch211-261d7.3.
  
     0.445
LOC105353878
Neural retina leucine zipper.
  
 
  0.437
LOC101171200
Embryonal Fyn-associated substrate.
  
 
  0.426
LOC101172332
Uncharacterized protein.
  
 0.414
homez
Homeobox and leucine zipper encoding a.
  
 
  0.411
ajuba
Ajuba.
  
 
   0.400
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.