STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159034RNA binding motif protein 7. (260 aa)    
Predicted Functional Partners:
zcchc8
Zinc finger, CCHC domain containing 8.
    
 
 0.984
mtrex
Uncharacterized protein.
    
 0.957
exosc8
Exosome component 8.
    
 
 0.872
exosc3
Exosome component 3.
    
 
 0.826
sf3b2
Splicing factor 3b, subunit 2.
    
 0.823
srrt
Serrate RNA effector molecule homolog (Arabidopsis).
    
 0.755
exosc2
Exosome component 2.
    
 
 0.746
exosc7
Exosome component 7.
    
 
 0.728
dhx9
DEAH (Asp-Glu-Ala-His) box helicase 9.
    
 0.722
exosc10
Exosome component 10.
    
 
 0.691
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.