STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105354539Uncharacterized protein. (348 aa)    
Predicted Functional Partners:
rpl18
Ribosomal protein L18.
     
 0.564
LOC101154755
VWFA domain-containing protein; Belongs to the integrin alpha chain family.
   
 0.502
LOC101156923
VWFA domain-containing protein; Belongs to the integrin alpha chain family.
   
 0.502
H2LQ39_ORYLA
VWFA domain-containing protein; Belongs to the integrin alpha chain family.
   
 0.502
LOC101175538
VWFA domain-containing protein; Belongs to the integrin alpha chain family.
   
 0.502
LOC101156687
VWFA domain-containing protein; Belongs to the integrin alpha chain family.
   
 0.502
ENSORLP00000033663
VWFA domain-containing protein; Belongs to the integrin alpha chain family.
   
 0.502
LOC110017206
VWFA domain-containing protein; Belongs to the integrin alpha chain family.
   
 0.502
ENSORLP00000044930
VWFA domain-containing protein; Belongs to the integrin alpha chain family.
   
 0.502
LOC100125525
Uncharacterized protein.
      
 0.457
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.